X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2931.26M NaH2PO4, 0.14M K2HPO4 pH 5.6
Crystal Properties
Matthews coefficientSolvent content
2.6553.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.868α = 90.01
b = 48.524β = 91.5
c = 130.126γ = 90.01
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152012-10-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B11SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.255097.111.33.8527803

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.265045717243897.060.252480.25070.28615RANDOM43.304
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.4-0.41-0.53-1.42-0.51-0.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.963
r_dihedral_angle_3_deg19.146
r_dihedral_angle_4_deg17.51
r_long_range_B_refined8.044
r_long_range_B_other8.044
r_dihedral_angle_1_deg6.985
r_scangle_other5.714
r_mcangle_other4.801
r_mcangle_it4.8
r_scbond_it3.678
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.963
r_dihedral_angle_3_deg19.146
r_dihedral_angle_4_deg17.51
r_long_range_B_refined8.044
r_long_range_B_other8.044
r_dihedral_angle_1_deg6.985
r_scangle_other5.714
r_mcangle_other4.801
r_mcangle_it4.8
r_scbond_it3.678
r_scbond_other3.678
r_mcbond_it3.114
r_mcbond_other3.109
r_angle_other_deg2.073
r_angle_refined_deg2.003
r_chiral_restr0.107
r_bond_refined_d0.014
r_bond_other_d0.01
r_gen_planes_refined0.007
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6714
Nucleic Acid Atoms
Solvent Atoms20
Heterogen Atoms200

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing