5G1Q

Compressed conformation of Francisella tularensis ClpP at 2.84 A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293RATIO 1:1, 293K, SITTING DROP. RESERVOIR CONDITION: 0.2 M NACL, 30% (V/V) MPD AND 0.1 M SODIUM ACETATE PH 4.6
Crystal Properties
Matthews coefficientSolvent content
2.245

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.461α = 90
b = 125.94β = 90
c = 96.95γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU CCDMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8496.9597.80.15.92.832741
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.842.9798.80.342.22

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3P2L2.8496.9531087163597.380.252390.248590.32604RANDOM36.592
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.131.280.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.202
r_dihedral_angle_3_deg16.957
r_dihedral_angle_4_deg14.512
r_dihedral_angle_1_deg7.288
r_mcangle_it2.377
r_scangle_it1.817
r_mcbond_it1.332
r_mcbond_other1.331
r_angle_refined_deg1.243
r_scbond_it0.989
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.202
r_dihedral_angle_3_deg16.957
r_dihedral_angle_4_deg14.512
r_dihedral_angle_1_deg7.288
r_mcangle_it2.377
r_scangle_it1.817
r_mcbond_it1.332
r_mcbond_other1.331
r_angle_refined_deg1.243
r_scbond_it0.989
r_angle_other_deg0.914
r_symmetry_vdw_refined0.214
r_nbd_refined0.169
r_symmetry_vdw_other0.165
r_nbtor_refined0.158
r_nbd_other0.135
r_xyhbond_nbd_refined0.116
r_symmetry_hbond_refined0.078
r_nbtor_other0.072
r_chiral_restr0.068
r_xyhbond_nbd_other0.02
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9309
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing