5G11

Pseudomonas aeruginosa HDAH bound to PFSAHA.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.090.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.79α = 90
b = 81.79β = 90
c = 204.86γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXEL2015-09-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4875.961000.1611.411.3254726.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.482.591000.36.911.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 5G0X2.4875.9624189120799.960.170490.167820.22396RANDOM16.502
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.09-1.092.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.364
r_dihedral_angle_4_deg15.329
r_dihedral_angle_3_deg13.559
r_dihedral_angle_1_deg6.105
r_angle_refined_deg1.581
r_angle_other_deg1.223
r_mcangle_it1.178
r_scbond_it0.676
r_mcbond_it0.648
r_mcbond_other0.648
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.364
r_dihedral_angle_4_deg15.329
r_dihedral_angle_3_deg13.559
r_dihedral_angle_1_deg6.105
r_angle_refined_deg1.581
r_angle_other_deg1.223
r_mcangle_it1.178
r_scbond_it0.676
r_mcbond_it0.648
r_mcbond_other0.648
r_chiral_restr0.196
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5667
Nucleic Acid Atoms
Solvent Atoms276
Heterogen Atoms68

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing