5FYN
Sub-tomogram averaging of Tula virus glycoprotein spike
ELECTRON MICROSCOPY
| Sample |
|---|
| GLYCOPROTEIN SPIKE OF TULA HANTAVIRUS |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | GATAN CRYOPLUNGE 3 |
| Cryogen Name | ETHANE-PROPANE |
| Sample Vitrification Details | LIQUID ETHANE-PROPANE |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | TOMOGRAPHY |
| Number of Particles | 5449 |
| Reported Resolution (Å) | 15.6 |
| Resolution Method | |
| Other Details | SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3364. (DEPOSITION ID: 14310). |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C2 |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (5FXU) | ||||
| Refinement Space | REAL | ||||
| Refinement Protocol | OTHER | ||||
| Refinement Target | Cross-correlation coefficient | ||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | METHOD--LOCAL CORRELATION REFINEMENT PROTOCOL--X-RAY | ||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 60 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | 2014-08-14 |
| Temperature (Kelvin) | 100 |
| Microscope Model | FEI POLARA 300 |
| Minimum Defocus (nm) | 2000 |
| Maximum Defocus (nm) | 3800 |
| Minimum Tilt Angle (degrees) | -45 |
| Maximum Tilt Angle (degrees) | 45 |
| Nominal CS | 2 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | 160000 |
| Calibrated Magnification | 37037 |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| MODEL FITTING | UCSF Chimera | |
| RECONSTRUCTION | Dynamo | |
| RECONSTRUCTION | IMOD | |
| MODEL FITTING | UCSF Chimera | |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| EACH TILTED IMAGE | ||||
