5FJE

CU(I)-CSP1 (COPPER STORAGE PROTEIN 1) FROM METHYLOSINUS TRICHOSPORIUM OB3B


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
10.03 M MGCL2, 0.03 M CACL2, 0.1 M TRIS PH 8.5, 12.5% V/V MPD (RACEMIC), 12.5% PEG 1000, 12.5% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
1.9436

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.41α = 90
b = 41.42β = 92.96
c = 53.13γ = 90
Symmetry
Space GroupP 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2013-08-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I24DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.953.0699.10.095.62.8152122
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9597.10.432.12.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE1.953.061448972299.040.199880.198190.23166RANDOM40.332
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.780.03-1.38-0.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_4_deg35.572
r_dihedral_angle_2_deg28.262
r_dihedral_angle_3_deg15.999
r_dihedral_angle_1_deg4.838
r_scbond_it4.272
r_mcangle_it4.078
r_mcbond_it3.149
r_mcbond_other3.099
r_angle_refined_deg1.594
r_angle_other_deg1.243
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_4_deg35.572
r_dihedral_angle_2_deg28.262
r_dihedral_angle_3_deg15.999
r_dihedral_angle_1_deg4.838
r_scbond_it4.272
r_mcangle_it4.078
r_mcbond_it3.149
r_mcbond_other3.099
r_angle_refined_deg1.594
r_angle_other_deg1.243
r_chiral_restr0.089
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.006
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1556
Nucleic Acid Atoms
Solvent Atoms116
Heterogen Atoms28

Software

Software
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
SHELXCDphasing
PHASERphasing
REFMACrefinement