5EP5

The crystal structure of the hypothetical protein SAV0944 mutant (Glu47Ala) from Staphylococcus aureus.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52961.5M Lithium sulphate, 0.1M HEPES Sodium pH7.5
Crystal Properties
Matthews coefficientSolvent content
2.3748.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.22α = 90
b = 91.57β = 99.52
c = 65.74γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-03-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.9537Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.94689.79.27.310339

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.946976657389.650.219910.21740.26284RANDOM42.22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.942.13-1.741.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.512
r_dihedral_angle_3_deg14.616
r_dihedral_angle_4_deg13.779
r_long_range_B_refined8.313
r_long_range_B_other8.313
r_dihedral_angle_1_deg5.839
r_scangle_other4.353
r_mcangle_other4.104
r_mcangle_it4.103
r_scbond_it2.518
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.512
r_dihedral_angle_3_deg14.616
r_dihedral_angle_4_deg13.779
r_long_range_B_refined8.313
r_long_range_B_other8.313
r_dihedral_angle_1_deg5.839
r_scangle_other4.353
r_mcangle_other4.104
r_mcangle_it4.103
r_scbond_it2.518
r_scbond_other2.517
r_mcbond_it2.388
r_mcbond_other2.382
r_angle_refined_deg1.472
r_angle_other_deg0.932
r_chiral_restr0.079
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3656
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing