X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.4293MnCl2, BeCl2, NaF, imidazole, Tris, ammonium sulfate, glycerol.
Crystal Properties
Matthews coefficientSolvent content
4.1870.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.58α = 90
b = 53.74β = 90
c = 162.61γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2014-10-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9481.399.6167.237450

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9481.333866179099.990.15790.15690.1775RANDOM22.423
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.830.23-1.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.405
r_dihedral_angle_4_deg11.972
r_dihedral_angle_3_deg10.963
r_dihedral_angle_1_deg5.491
r_angle_refined_deg1.672
r_mcangle_it1.461
r_angle_other_deg1.316
r_mcbond_it1.01
r_mcbond_other1.008
r_chiral_restr0.123
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.405
r_dihedral_angle_4_deg11.972
r_dihedral_angle_3_deg10.963
r_dihedral_angle_1_deg5.491
r_angle_refined_deg1.672
r_mcangle_it1.461
r_angle_other_deg1.316
r_mcbond_it1.01
r_mcbond_other1.008
r_chiral_restr0.123
r_bond_refined_d0.017
r_gen_planes_refined0.009
r_bond_other_d0.007
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1962
Nucleic Acid Atoms
Solvent Atoms304
Heterogen Atoms82

Software

Software
Software NamePurpose
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Omodel building