5C3O

Crystal structure of the C-terminal truncated Neurospora crassa T7H (NcT7HdeltaC) in apo form


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52890.2 M (NH4)2SO4, 0.1 M MES, 30%(W/v) PEGMME 5000
Crystal Properties
Matthews coefficientSolvent content
3.3262.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 119.148α = 90
b = 119.148β = 90
c = 56.631γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX225HE2014-01-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.9792SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3501000.10211.510.52059140.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.381000.54510.62062

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.35019527105399.890.19780.19640.2241RANDOM50.323
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.160.160.16-0.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.426
r_dihedral_angle_4_deg16.233
r_dihedral_angle_3_deg14.622
r_dihedral_angle_1_deg5.7
r_angle_other_deg3.558
r_mcangle_it3.369
r_mcbond_it1.888
r_mcbond_other1.888
r_angle_refined_deg1.054
r_chiral_restr0.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.426
r_dihedral_angle_4_deg16.233
r_dihedral_angle_3_deg14.622
r_dihedral_angle_1_deg5.7
r_angle_other_deg3.558
r_mcangle_it3.369
r_mcbond_it1.888
r_mcbond_other1.888
r_angle_refined_deg1.054
r_chiral_restr0.06
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.003
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2049
Nucleic Acid Atoms
Solvent Atoms109
Heterogen Atoms25

Software

Software
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
SADABSphasing
REFMACrefinement
PDB_EXTRACTdata extraction