X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1710% PEG 4000, 10% ISOPROPANOL, 100MM LICL, 100 MM SODIUM CITRATE PH 6.
Crystal Properties
Matthews coefficientSolvent content
3.3263.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.9α = 107.59
b = 86.8β = 102.96
c = 129.03γ = 95.59
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2014-03-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BMAPS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.415071.80.0615.342.97956781.65
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.412.4659.70.331.651.94

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2CG32.41118.7790647495871.660.256240.253490.30701RANDOM46.865
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.230.12-0.350.6-0.19-1.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.006
r_dihedral_angle_4_deg18.06
r_dihedral_angle_3_deg16.164
r_dihedral_angle_1_deg7.792
r_long_range_B_refined7.318
r_long_range_B_other7.318
r_mcangle_it4.792
r_mcangle_other4.792
r_scangle_other4.139
r_mcbond_it2.954
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.006
r_dihedral_angle_4_deg18.06
r_dihedral_angle_3_deg16.164
r_dihedral_angle_1_deg7.792
r_long_range_B_refined7.318
r_long_range_B_other7.318
r_mcangle_it4.792
r_mcangle_other4.792
r_scangle_other4.139
r_mcbond_it2.954
r_mcbond_other2.954
r_scbond_it2.493
r_scbond_other2.493
r_angle_refined_deg1.894
r_angle_other_deg1.111
r_chiral_restr0.098
r_bond_refined_d0.018
r_gen_planes_refined0.008
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms19624
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing