4ZN1

Crystal Structure of MjSpt4:Spt5 complex conformation A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5295PEG 5000MME, propanol, MES, sarcosine
Crystal Properties
Matthews coefficientSolvent content
2.5551.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.82α = 90
b = 84.82β = 90
c = 34.31γ = 90
Symmetry
Space GroupP 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2008-05-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBSRF BEAMLINE 3W1A1.000BSRF3W1A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.837.9399.620.646086
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9599.90.2993.74

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3EWG, 1RYQ, 1NPP2.837.93592929099.390.243920.242220.28247RANDOM69.501
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.24-1.242.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.613
r_dihedral_angle_4_deg30.51
r_dihedral_angle_3_deg22.086
r_long_range_B_refined8.071
r_long_range_B_other8.068
r_dihedral_angle_1_deg5.762
r_scangle_other5.363
r_mcangle_it5.244
r_mcangle_other5.242
r_scbond_it3.263
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.613
r_dihedral_angle_4_deg30.51
r_dihedral_angle_3_deg22.086
r_long_range_B_refined8.071
r_long_range_B_other8.068
r_dihedral_angle_1_deg5.762
r_scangle_other5.363
r_mcangle_it5.244
r_mcangle_other5.242
r_scbond_it3.263
r_scbond_other3.255
r_mcbond_it3.247
r_mcbond_other3.247
r_angle_refined_deg1.426
r_angle_other_deg0.975
r_chiral_restr0.074
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1389
Nucleic Acid Atoms
Solvent Atoms16
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
PHASERphasing