4ZK9

The chemokine binding protein of orf virus complexed with CCL2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62890.2M potassium sodium tartrate tetrahydrate, 0.1M sodium citrate tribasic dihydrate pH5.6, 2.0M ammonium citrate
Crystal Properties
Matthews coefficientSolvent content
3.6366.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.802α = 90
b = 78.802β = 90
c = 185.613γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93.2CCDADSC QUANTUM 210r2011-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX10.95369Australian SynchrotronMX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.638.541000.06731.914.21883562.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.741000.8933.114.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4P5I2.638.541780396299.910.240620.238490.28094RANDOM77.474
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.072.07-4.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.015
r_dihedral_angle_3_deg14.458
r_dihedral_angle_4_deg12.04
r_dihedral_angle_1_deg5.739
r_long_range_B_refined4.608
r_long_range_B_other4.607
r_scangle_other3.678
r_mcangle_it2.508
r_mcangle_other2.507
r_scbond_it2.274
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.015
r_dihedral_angle_3_deg14.458
r_dihedral_angle_4_deg12.04
r_dihedral_angle_1_deg5.739
r_long_range_B_refined4.608
r_long_range_B_other4.607
r_scangle_other3.678
r_mcangle_it2.508
r_mcangle_other2.507
r_scbond_it2.274
r_scbond_other2.273
r_mcbond_other1.481
r_mcbond_it1.48
r_angle_refined_deg1.194
r_angle_other_deg0.699
r_chiral_restr0.066
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1984
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing