Experiment: 4Z3C

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7.5	291	30% PEG-1500, 0.2 M sodium chloride, 0.1 M HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.4	48.3

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 27.616	α = 90
b = 54.744	β = 103.53
c = 40.228	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r		2013-06-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-ID	0.97918	APS	19-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.57	39.11	99.7	0.07	0.042	0.998	10.4	3.6		16318

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.57	1.6	99.8		1.07	0.665	0.464	1.1	3.5	812

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	4HP3	1.57	39.11	16301	807	99.62	0.2164	0.2146	0.2525	RANDOM	28.058

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.37		0.79	-2.39		1.47

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.986
r_dihedral_angle_4_deg	24.509
r_dihedral_angle_3_deg	11.924
r_dihedral_angle_1_deg	5.984
r_mcangle_it	2.42
r_angle_refined_deg	1.667
r_mcbond_other	1.623
r_mcbond_it	1.619
r_angle_other_deg	1.451
r_chiral_restr	0.089

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.986
r_dihedral_angle_4_deg	24.509
r_dihedral_angle_3_deg	11.924
r_dihedral_angle_1_deg	5.984
r_mcangle_it	2.42
r_angle_refined_deg	1.667
r_mcbond_other	1.623
r_mcbond_it	1.619
r_angle_other_deg	1.451
r_chiral_restr	0.089
r_bond_refined_d	0.017
r_gen_planes_refined	0.014
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	324
Nucleic Acid Atoms	486
Solvent Atoms	85
Heterogen Atoms	6

Software

Software
Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.