X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M MMT buffer (1:2:2 L-Malic acid, MES, Tris [pH 6.0]) and 25% (w/v) PEG1500
Crystal Properties
Matthews coefficientSolvent content
2.957.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.09α = 90
b = 48.24β = 90
c = 234.13γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2013-09-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9790DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8958.5399.32.6512.2535603

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.8958.5333734177899.320.196930.194680.24078RANDOM22.575
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.421.02-0.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.188
r_dihedral_angle_3_deg13.297
r_dihedral_angle_4_deg10.394
r_dihedral_angle_1_deg6.474
r_long_range_B_refined6.208
r_long_range_B_other6.015
r_scangle_other4.281
r_scbond_it2.799
r_scbond_other2.798
r_mcangle_it2.416
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.188
r_dihedral_angle_3_deg13.297
r_dihedral_angle_4_deg10.394
r_dihedral_angle_1_deg6.474
r_long_range_B_refined6.208
r_long_range_B_other6.015
r_scangle_other4.281
r_scbond_it2.799
r_scbond_other2.798
r_mcangle_it2.416
r_mcangle_other2.415
r_angle_refined_deg1.817
r_mcbond_it1.781
r_mcbond_other1.781
r_angle_other_deg0.869
r_chiral_restr0.129
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2605
Nucleic Acid Atoms
Solvent Atoms320
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement