Experiment: 4Y6T

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		295	12% PEG 8000, 10% glycerol, 0.5M potassium chloride

Crystal Properties
Matthews coefficient	Solvent content
3.22	65.49

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 103.04	α = 90
b = 69.98	β = 105.51
c = 103.44	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2013-11-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE BM14	0.97856	ESRF	BM14

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Rrim I (All)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	99.673	97.8	0.095	0.101	0.036	16.3	7.8	54445	54445

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	2.53	97.2		0.692	0.692	0.264	3.2	7.8	7822

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.4	99.67	51665	2765	97.51	0.2093	0.2075	0.2443	RANDOM	47.479

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.01		-0.01	0.01

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.88
r_dihedral_angle_3_deg	14.394
r_dihedral_angle_4_deg	11.072
r_dihedral_angle_1_deg	7.614
r_mcangle_it	6.624
r_mcbond_it	4.418
r_mcbond_other	4.411
r_angle_refined_deg	1.724
r_angle_other_deg	1.492
r_chiral_restr	0.099

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.88
r_dihedral_angle_3_deg	14.394
r_dihedral_angle_4_deg	11.072
r_dihedral_angle_1_deg	7.614
r_mcangle_it	6.624
r_mcbond_it	4.418
r_mcbond_other	4.411
r_angle_refined_deg	1.724
r_angle_other_deg	1.492
r_chiral_restr	0.099
r_bond_refined_d	0.016
r_gen_planes_refined	0.011
r_bond_other_d	0.009
r_gen_planes_other	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6695
Nucleic Acid Atoms
Solvent Atoms	427
Heterogen Atoms	4

Software

Software
Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
PHENIX	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.