X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.6293Reservoir buffer: 30% PEG 4000, 0.1 M Na acetate, 0.2 M ammonium acetate. The drop consisted of 0.5 mkl of 2.3 mg/ml protein solution + 0.5 mkl of reservoir buffer supplemented with 20 mkM Ca2+ and 1 mM Mg2+.
Crystal Properties
Matthews coefficientSolvent content
2.346.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.315α = 90
b = 63.274β = 90
c = 117.334γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-32007-06-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97901APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.015099.70.04812.16.924564-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.012.0899.10.2765.96.42418

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1XJL2.015023260125699.620.15920.15650.209RANDOM39.063
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.021.19-1.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.986
r_dihedral_angle_4_deg20.731
r_dihedral_angle_3_deg15.383
r_dihedral_angle_1_deg6.211
r_mcangle_it3.415
r_mcbond_it2.224
r_mcbond_other2.224
r_angle_refined_deg1.753
r_angle_other_deg0.832
r_chiral_restr0.095
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.986
r_dihedral_angle_4_deg20.731
r_dihedral_angle_3_deg15.383
r_dihedral_angle_1_deg6.211
r_mcangle_it3.415
r_mcbond_it2.224
r_mcbond_other2.224
r_angle_refined_deg1.753
r_angle_other_deg0.832
r_chiral_restr0.095
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2525
Nucleic Acid Atoms
Solvent Atoms267
Heterogen Atoms4

Software

Software
Software NamePurpose
DENZOdata reduction
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SCALEPACKdata scaling