4S1L

Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 298 K


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1In vivo7.5301CRYSTALS FORMED NATURALLY WITHIN THE CYTOPLASM AND WERE PURIFIED FROM CELLS, pH 7.5, In vivo, temperature 301K
Crystal Properties
Matthews coefficientSolvent content
1.8533.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.1α = 90
b = 106.1β = 90
c = 106.1γ = 90
Symmetry
Space GroupI 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298FLAT PANELCornell-SLAC Pixel Array Detector (CSPAD)2013-03-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1FREE ELECTRON LASERSLAC LCLS BEAMLINE CXI1.456SLAC LCLSCXI

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7528.3100201402012222
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.7528.3100

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT1.75228.31.422014020122103299.950.12380.12210.1543Random
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d14.805
f_angle_d1.386
f_chiral_restr0.055
f_bond_d0.01
f_plane_restr0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1880
Nucleic Acid Atoms
Solvent Atoms174
Heterogen Atoms32

Software

Software
Software NamePurpose
DIALSdata collection
cctbx.xfeldata reduction
PHASERphasing
PHENIXrefinement
DIALSdata reduction
DIALSdata scaling