X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.529325.9% PEG3000, 100mM MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0239.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.52α = 90
b = 85.17β = 100.32
c = 63.14γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2013-06-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
111094.90.03615.62.721537420432922
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
111.188.10.3352.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2HQK11022043281941111021794.890.131750.13080.14995RANDOM12.239
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.15-0.13-0.290.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.435
r_sphericity_free25.812
r_dihedral_angle_4_deg15.758
r_dihedral_angle_3_deg12.373
r_sphericity_bonded7.164
r_dihedral_angle_1_deg6.987
r_long_range_B_refined3.112
r_long_range_B_other2.376
r_rigid_bond_restr2.375
r_angle_refined_deg1.668
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.435
r_sphericity_free25.812
r_dihedral_angle_4_deg15.758
r_dihedral_angle_3_deg12.373
r_sphericity_bonded7.164
r_dihedral_angle_1_deg6.987
r_long_range_B_refined3.112
r_long_range_B_other2.376
r_rigid_bond_restr2.375
r_angle_refined_deg1.668
r_scangle_other1.648
r_scbond_it1.391
r_scbond_other1.38
r_mcangle_it1.209
r_mcangle_other1.209
r_mcbond_it0.986
r_mcbond_other0.985
r_angle_other_deg0.781
r_chiral_restr0.098
r_bond_refined_d0.01
r_gen_planes_refined0.01
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3556
Nucleic Acid Atoms
Solvent Atoms761
Heterogen Atoms

Software

Software
Software NamePurpose
XDSdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling