4Q4G

Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at C383


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62935 and 8 mg mL-1 protein concentration, respectively, and 8% (v/v) 2-Propanol, 16% (w/v) PEG4000 in 60 mM Sodium citrate trihydrate buffer, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.757α = 90
b = 65.505β = 90
c = 67.978γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2011-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.9343ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.97309779797211
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.97199.9

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT0.9710.549364396.40.126270.126270.174627.752
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.130.03-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.036
r_dihedral_angle_4_deg13.169
r_sphericity_free12.174
r_dihedral_angle_3_deg11.275
r_dihedral_angle_1_deg6.387
r_scangle_it6.267
r_scbond_it4.421
r_sphericity_bonded4.098
r_mcangle_it2.735
r_angle_refined_deg2.174
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.036
r_dihedral_angle_4_deg13.169
r_sphericity_free12.174
r_dihedral_angle_3_deg11.275
r_dihedral_angle_1_deg6.387
r_scangle_it6.267
r_scbond_it4.421
r_sphericity_bonded4.098
r_mcangle_it2.735
r_angle_refined_deg2.174
r_rigid_bond_restr2.033
r_mcbond_it1.806
r_angle_other_deg1.046
r_mcbond_other0.846
r_chiral_restr0.127
r_bond_refined_d0.028
r_gen_planes_refined0.012
r_bond_other_d0.006
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1533
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement