4P1H

Crystal structure of wild type Hypocrea jecorina Cel7a in a monoclinic crystal form


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP308PEG3350, Benzamidine, Gadolinium(III) chloride hexahydrate, HEPES
Crystal Properties
Matthews coefficientSolvent content
2.1141.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 152.459α = 90
b = 44.904β = 101.25
c = 57.567γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2012-02-15SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.0APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.574.7796.60.07163.359300
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5485.60.3282.34368

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2V3I1.574.77564783014970.160110.158560.18977RANDOM21.943
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.771.230.470.75
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.158
r_dihedral_angle_4_deg15.879
r_dihedral_angle_3_deg12.04
r_dihedral_angle_1_deg6.531
r_long_range_B_refined5.37
r_long_range_B_other5.175
r_scangle_other3.919
r_scbond_it2.754
r_scbond_other2.753
r_mcangle_it2.239
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.158
r_dihedral_angle_4_deg15.879
r_dihedral_angle_3_deg12.04
r_dihedral_angle_1_deg6.531
r_long_range_B_refined5.37
r_long_range_B_other5.175
r_scangle_other3.919
r_scbond_it2.754
r_scbond_other2.753
r_mcangle_it2.239
r_mcangle_other2.239
r_angle_refined_deg2.144
r_mcbond_it1.607
r_mcbond_other1.606
r_angle_other_deg1.03
r_chiral_restr0.145
r_bond_refined_d0.024
r_gen_planes_refined0.012
r_bond_other_d0.004
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3166
Nucleic Acid Atoms
Solvent Atoms364
Heterogen Atoms36

Software

Software
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction