4O45

WDR5 in complex with influenza NS1 C-terminal tail


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.529125% PEG3350, 0.1 M ammonium sulfate, 0.1 M bis-tris, pH 6.5, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.139.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.218α = 90
b = 85.83β = 90
c = 40.4γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152012-10-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97923APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8737.941000.06421.77.124106
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.871.9199.91.0542.37.21535

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTunpublished crystal structure of WDR51.8737.9424062123999.90.17630.17430.2121RANDOM36.4632
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.94-0.093.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.287
r_dihedral_angle_3_deg12.989
r_dihedral_angle_4_deg12.631
r_dihedral_angle_1_deg7.019
r_mcangle_it2.415
r_mcbond_it1.734
r_mcbond_other1.729
r_angle_refined_deg1.393
r_angle_other_deg0.785
r_chiral_restr0.081
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.287
r_dihedral_angle_3_deg12.989
r_dihedral_angle_4_deg12.631
r_dihedral_angle_1_deg7.019
r_mcangle_it2.415
r_mcbond_it1.734
r_mcbond_other1.729
r_angle_refined_deg1.393
r_angle_other_deg0.785
r_chiral_restr0.081
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2337
Nucleic Acid Atoms
Solvent Atoms93
Heterogen Atoms17

Software

Software
Software NamePurpose
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction