4NOI

2.17 Angstrom Crystal Structure of DNA-directed RNA Polymerase Subunit Alpha from Campylobacter jejuni.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5295Protein: 23 mG/mL, 0.25 M Sodium chloride, 0.01 M Tris-HCL buffer pH 8.3; Screen: PACT (F3), 0.2M Sodium iodine, 0.1M Bis-Tris propane pH 6.5, 20% (w/v) PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 295K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.173α = 90
b = 62.743β = 112.52
c = 93.621γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDBeryllium lenses2011-03-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.173099.40.0770.07721.13.15435654356-368.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.172.211000.5660.5662.13.12715

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.1729.492642926429140798.50.17620.17620.173630.22505RANDOM49.352
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.93-0.05-1.910.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.204
r_dihedral_angle_4_deg12.947
r_dihedral_angle_3_deg11.161
r_long_range_B_refined8.814
r_long_range_B_other8.733
r_scangle_other6.77
r_scbond_it4.521
r_scbond_other4.52
r_mcangle_it4.135
r_mcangle_other4.135
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.204
r_dihedral_angle_4_deg12.947
r_dihedral_angle_3_deg11.161
r_long_range_B_refined8.814
r_long_range_B_other8.733
r_scangle_other6.77
r_scbond_it4.521
r_scbond_other4.52
r_mcangle_it4.135
r_mcangle_other4.135
r_dihedral_angle_1_deg3.287
r_mcbond_it2.984
r_mcbond_other2.977
r_angle_refined_deg1.521
r_angle_other_deg0.701
r_chiral_restr0.086
r_gen_planes_refined0.019
r_gen_planes_other0.017
r_bond_refined_d0.011
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3560
Nucleic Acid Atoms
Solvent Atoms217
Heterogen Atoms17

Software

Software
Software NamePurpose
Blu-Icedata collection
SHELXSphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling