X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.929810 mM calcium chloride, 100 mM HEPES pH 7.0, 2.72 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2645.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.958α = 90
b = 61.249β = 90
c = 74.149γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2012-11-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-CAPS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.7961.3899.8234158
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.790.8396.95.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1SGT0.8147.222208741167899.50.1120.1090.12RANDOM12.61
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.440.45-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.127
r_sphericity_free20.091
r_dihedral_angle_3_deg12.202
r_dihedral_angle_4_deg10.924
r_sphericity_bonded9.897
r_dihedral_angle_1_deg6.671
r_rigid_bond_restr5.712
r_angle_other_deg3.099
r_long_range_B_refined2.983
r_long_range_B_other2.446
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.127
r_sphericity_free20.091
r_dihedral_angle_3_deg12.202
r_dihedral_angle_4_deg10.924
r_sphericity_bonded9.897
r_dihedral_angle_1_deg6.671
r_rigid_bond_restr5.712
r_angle_other_deg3.099
r_long_range_B_refined2.983
r_long_range_B_other2.446
r_scbond_it2.131
r_scangle_other2.066
r_angle_refined_deg2.032
r_scbond_other1.709
r_mcangle_other1.513
r_mcangle_it1.265
r_mcbond_it1.011
r_mcbond_other0.94
r_chiral_restr0.124
r_bond_refined_d0.02
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1613
Nucleic Acid Atoms
Solvent Atoms353
Heterogen Atoms

Software

Software
Software NamePurpose
XDSdata scaling
ARP/wARPmodel building
REFMACrefinement
XDSdata reduction
Aimlessdata scaling