4M1R

Structure of a novel cellulase 5 from a sugarcane soil metagenomic library


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.529135% (v/v) isopropanol, 30% (w/v) PEG3350 and 100 mM Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
1.935.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.888α = 90
b = 87.512β = 98.55
c = 66.63γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2012-12-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE W01B-MX21.458LNLSW01B-MX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85093.5411744117411

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.828.554117439059206293.270.132840.130720.17271RANDOM15.097
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.193
r_dihedral_angle_4_deg19.748
r_dihedral_angle_3_deg13.283
r_dihedral_angle_1_deg6.571
r_scangle_it4.564
r_scbond_it3.099
r_mcangle_it1.899
r_angle_refined_deg1.876
r_mcbond_it1.206
r_chiral_restr0.164
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.193
r_dihedral_angle_4_deg19.748
r_dihedral_angle_3_deg13.283
r_dihedral_angle_1_deg6.571
r_scangle_it4.564
r_scbond_it3.099
r_mcangle_it1.899
r_angle_refined_deg1.876
r_mcbond_it1.206
r_chiral_restr0.164
r_bond_refined_d0.027
r_gen_planes_refined0.012
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4488
Nucleic Acid Atoms
Solvent Atoms389
Heterogen Atoms16

Software

Software
Software NamePurpose
NatXraydata collection
PHASERphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling