4LNC
Neutron structure of the cyclic glucose bound Xylose Isomerase E186Q mutant
NEUTRON DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 7.7 | 295 | Large crystals were grown in 1.5 ml Eppendorf tubes with 15% ammonium sulfate, 72 mg/ml D-xylose isomerase at ph 7.7, Batch method, temperature 295K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.79 | 55.84 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 93.97 | α = 90 |
b = 99.52 | β = 90 |
c = 102.92 | γ = 90 |
Symmetry | |
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Space Group | I 2 2 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | neutron | 293 | IMAGE PLATE | EMBL PROTOTYPE LADI-I | Ni/Ti MULTILAYER | 2000-06-04 | L | LAUE |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | NUCLEAR REACTOR | ILL BEAMLINE H142 | 3.6-5.0 | ILL | H142 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
2 | 1.83 | 25 | 83.2 | 0.173 | 0.173 | 4.3 | 2.4 | 35317 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
2 | 1.83 | 1.92 | 64.6 | 0.24 | 0.24 | 3.4 | 2.1 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | Mean Isotropic B | ||||||||
X-RAY DIFFRACTION | 1.84 | 14.54 | 1.35 | 35159 | 3518 | 83.2 | 0.156 | 0.15 | 0.209 | 22.6826 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 19.247 |
f_angle_d | 2.136 |
f_chiral_restr | 0.156 |
f_bond_d | 0.022 |
f_plane_restr | 0.013 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 3027 |
Nucleic Acid Atoms | |
Solvent Atoms | 289 |
Heterogen Atoms | 15 |
Software
Software | |
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Software Name | Purpose |
Quasi-Laue | data collection |
PHENIX | refinement |
LAUEGEN | data reduction |
SCALA | data scaling |
PHENIX | phasing |