4LI5

EGFR-K IN COMPLEX WITH N-[3-[[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]-4-methoxy-phenyl] Prop-2-enamide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION4.6293The protein at 6 mg/ml was crystallized from 0.2 M NH4Cl, 1.2 M Na-K-tartrate buffered with 10mM acetate at pH 4.6 and 0.15M Hepes pH 7.0, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.6666

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 144.892α = 90
b = 144.892β = 90
c = 144.892γ = 90
Symmetry
Space GroupI 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2010-07-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.0SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.63102.699.90.0920.09232.0224.415034150262
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.642.781000.6970.4459.7525.52185

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.64102.6144871448753999.950.165990.165990.164650.20299RANDOM44.114
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.267
r_dihedral_angle_4_deg21.418
r_dihedral_angle_3_deg12.409
r_dihedral_angle_1_deg5.443
r_scangle_it4.845
r_scbond_it3.075
r_mcangle_it2.21
r_mcbond_it1.164
r_angle_refined_deg1.045
r_angle_other_deg0.723
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.267
r_dihedral_angle_4_deg21.418
r_dihedral_angle_3_deg12.409
r_dihedral_angle_1_deg5.443
r_scangle_it4.845
r_scbond_it3.075
r_mcangle_it2.21
r_mcbond_it1.164
r_angle_refined_deg1.045
r_angle_other_deg0.723
r_mcbond_other0.217
r_nbd_refined0.191
r_nbd_other0.175
r_nbtor_refined0.174
r_xyhbond_nbd_other0.174
r_xyhbond_nbd_refined0.153
r_symmetry_vdw_other0.141
r_symmetry_vdw_refined0.11
r_symmetry_hbond_refined0.099
r_nbtor_other0.08
r_chiral_restr0.059
r_bond_refined_d0.007
r_gen_planes_other0.005
r_bond_other_d0.003
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2437
Nucleic Acid Atoms
Solvent Atoms69
Heterogen Atoms31

Software

Software
Software NamePurpose
DA+data collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling