4LGN

The structure of Acidothermus cellulolyticus family 74 glycoside hydrolase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP52940.1 M tri-Sodium citrate Dihydrate pH 5.0, 1.5 M Na Formate, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.6653.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.761α = 90
b = 78.686β = 90
c = 143.952γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker Platinum 135HELIOS MIRRORS2010-03-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8240.411000.15578.525.667687576875
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.821.911000.53431.984.3410202

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2CN31.8240.4172650386199.610.15250.150190.1964RANDOM11.469
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.110.08-0.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.309
r_dihedral_angle_4_deg19.288
r_dihedral_angle_3_deg12.146
r_dihedral_angle_1_deg7.505
r_long_range_B_refined5.912
r_long_range_B_other5.071
r_scangle_other2.103
r_angle_refined_deg1.931
r_mcangle_other1.483
r_mcangle_it1.478
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.309
r_dihedral_angle_4_deg19.288
r_dihedral_angle_3_deg12.146
r_dihedral_angle_1_deg7.505
r_long_range_B_refined5.912
r_long_range_B_other5.071
r_scangle_other2.103
r_angle_refined_deg1.931
r_mcangle_other1.483
r_mcangle_it1.478
r_scbond_it1.402
r_scbond_other1.382
r_mcbond_it1.005
r_mcbond_other1.005
r_angle_other_deg0.946
r_chiral_restr0.128
r_bond_refined_d0.02
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5537
Nucleic Acid Atoms
Solvent Atoms1121
Heterogen Atoms121

Software

Software
Software NamePurpose
PROTEUM PLUSdata collection
MOLREPphasing
REFMACrefinement
PROTEUM PLUSdata reduction
PROTEUM PLUSdata scaling