X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP62981.2 M sodium citrate and 2 mM DTT, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
4.1570.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 136.465α = 90
b = 147.518β = 125.17
c = 91.214γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2009-07-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7989.0995.70.0656.52.53767036050
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.792.9896.21.1340.72.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.7949.5376703396671096.190.223560.223560.222390.28142RANDOM87.052
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.660.27-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.631
r_dihedral_angle_4_deg20.862
r_dihedral_angle_3_deg16.793
r_dihedral_angle_1_deg6.208
r_scangle_it5.901
r_scbond_it3.74
r_mcangle_it2.602
r_mcbond_it1.403
r_angle_refined_deg1.141
r_angle_other_deg0.824
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.631
r_dihedral_angle_4_deg20.862
r_dihedral_angle_3_deg16.793
r_dihedral_angle_1_deg6.208
r_scangle_it5.901
r_scbond_it3.74
r_mcangle_it2.602
r_mcbond_it1.403
r_angle_refined_deg1.141
r_angle_other_deg0.824
r_mcbond_other0.254
r_chiral_restr0.065
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6292
Nucleic Acid Atoms
Solvent Atoms6
Heterogen Atoms40

Software

Software
Software NamePurpose
HKL-2000data collection
CCP4model building
Cootmodel building
REFMACrefinement
XDSdata reduction
SCALAdata scaling
CCP4phasing