4L44

Crystal structures of human p70S6K1-T389A (form II)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop7.22892M lithium sulfate, 0.05M magnesium sulfate, 0.05M HEPES, pH 7.2, hanging drop, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.5652.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.961α = 90
b = 77.961β = 90
c = 113.829γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCCD ADSC unsupported-q3152012-02-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.9797SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.95098.80.1349.73.99546
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.9399.70.3764.1932

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.950913547598.190.24590.24320.2978RANDOM39.5494
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.340.671.34-2.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.427
r_dihedral_angle_3_deg17.95
r_dihedral_angle_4_deg15.147
r_dihedral_angle_1_deg6.221
r_mcangle_it4.546
r_scangle_it4.539
r_mcbond_it2.758
r_scbond_it2.697
r_rigid_bond_restr2.646
r_angle_refined_deg1.576
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.427
r_dihedral_angle_3_deg17.95
r_dihedral_angle_4_deg15.147
r_dihedral_angle_1_deg6.221
r_mcangle_it4.546
r_scangle_it4.539
r_mcbond_it2.758
r_scbond_it2.697
r_rigid_bond_restr2.646
r_angle_refined_deg1.576
r_chiral_restr0.11
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2558
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms44

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction