X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP429320% PEG 1500, malonate/imidazole/borate buffer, pH 4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8256.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.398α = 90
b = 85.398β = 90
c = 176.092γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2011-04-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9763ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8301000.0570.06722.37.267131671312319.939
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.91000.4130.1884.36.79812

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.821671316364233951000.168450.168450.166910.19797RANDOM23.35
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.79-0.4-0.791.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.798
r_dihedral_angle_4_deg17.046
r_dihedral_angle_3_deg13.64
r_dihedral_angle_1_deg5.953
r_scangle_it2.435
r_scbond_it1.674
r_angle_refined_deg1.206
r_mcangle_it1.128
r_mcbond_it0.693
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.798
r_dihedral_angle_4_deg17.046
r_dihedral_angle_3_deg13.64
r_dihedral_angle_1_deg5.953
r_scangle_it2.435
r_scbond_it1.674
r_angle_refined_deg1.206
r_mcangle_it1.128
r_mcbond_it0.693
r_nbtor_refined0.306
r_nbd_refined0.195
r_symmetry_hbond_refined0.195
r_symmetry_vdw_refined0.173
r_xyhbond_nbd_refined0.128
r_chiral_restr0.086
r_metal_ion_refined0.084
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4523
Nucleic Acid Atoms
Solvent Atoms520
Heterogen Atoms79

Software

Software
Software NamePurpose
ADSCdata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling