X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.52890.72 M NaH2PO4, 0.08 M K2HPO4 and 0.2 M NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.1141.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.664α = 90
b = 65.128β = 90
c = 117.431γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++2002-05-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85099.30.05617.611.5351003
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8595.30.2922.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.81531479350499.10.1870.1810.234RANDOM25.84
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.951.42-0.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.324
r_scangle_it5.811
r_dihedral_angle_1_deg4.851
r_scbond_it3.873
r_mcangle_it2.462
r_mcbond_it1.531
r_angle_refined_deg1.526
r_symmetry_hbond_refined0.383
r_nbd_refined0.225
r_symmetry_vdw_refined0.206
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.324
r_scangle_it5.811
r_dihedral_angle_1_deg4.851
r_scbond_it3.873
r_mcangle_it2.462
r_mcbond_it1.531
r_angle_refined_deg1.526
r_symmetry_hbond_refined0.383
r_nbd_refined0.225
r_symmetry_vdw_refined0.206
r_xyhbond_nbd_refined0.166
r_chiral_restr0.113
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3037
Nucleic Acid Atoms
Solvent Atoms288
Heterogen Atoms

Software

Software
Software NamePurpose
CrystalCleardata collection
MLPHAREphasing
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling