4JH7

Crystal Structure of FosB from Bacillus cereus with Manganese and L-Cysteine-Fosfomycin Product


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7298PEG 3350, Magnesium formate , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3447.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.292α = 90
b = 68.309β = 90
c = 70.183γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002012-06-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.078APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.555097.90.0668.87.444593
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.5895.60.4537.32150

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.5548.9544546224697.810.13590.13330.1864RANDOM15.6737
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.140.230.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.733
r_sphericity_free20.423
r_dihedral_angle_4_deg15.275
r_dihedral_angle_3_deg13.413
r_sphericity_bonded11.617
r_rigid_bond_restr8.108
r_dihedral_angle_1_deg6.395
r_angle_refined_deg2.072
r_chiral_restr0.162
r_bond_refined_d0.021
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.733
r_sphericity_free20.423
r_dihedral_angle_4_deg15.275
r_dihedral_angle_3_deg13.413
r_sphericity_bonded11.617
r_rigid_bond_restr8.108
r_dihedral_angle_1_deg6.395
r_angle_refined_deg2.072
r_chiral_restr0.162
r_bond_refined_d0.021
r_gen_planes_refined0.013
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2326
Nucleic Acid Atoms
Solvent Atoms258
Heterogen Atoms37

Software

Software
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
PHASERphasing