X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1SMALL TUBES5.82981.9-2.2M Na/K Phosphate, pH 5.8, SMALL TUBES, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2244.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.537α = 90
b = 99.884β = 90
c = 125.242γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152009-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-C0.979APS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.245098.90.0590.05929.56.2321447321447

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1SCT1.2511.792719031422589.810.139210.137380.17421RANDOM16.296
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.06-0.03-0.04
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free37.14
r_dihedral_angle_2_deg33.162
r_dihedral_angle_4_deg18.248
r_dihedral_angle_3_deg12.017
r_sphericity_bonded11.493
r_dihedral_angle_1_deg4.378
r_rigid_bond_restr2.893
r_angle_refined_deg1.416
r_angle_other_deg0.805
r_chiral_restr0.073
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free37.14
r_dihedral_angle_2_deg33.162
r_dihedral_angle_4_deg18.248
r_dihedral_angle_3_deg12.017
r_sphericity_bonded11.493
r_dihedral_angle_1_deg4.378
r_rigid_bond_restr2.893
r_angle_refined_deg1.416
r_angle_other_deg0.805
r_chiral_restr0.073
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9138
Nucleic Acid Atoms
Solvent Atoms1984
Heterogen Atoms360

Software

Software
Software NamePurpose
ADSCdata collection
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing