4H7A

Crystal structure of CasB from Thermus thermophilus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.7291.50.1M MES, pH 5.7-5.9, 50 mM MgSO4, 5% (w/v) PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 291.5K
Crystal Properties
Matthews coefficientSolvent content
2.7755.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.777α = 90
b = 100.777β = 90
c = 84.862γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102011-10-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE A10.9770CHESSA1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.63092.71299622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6486.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2ZCA2.6301297363892.750.1760.17340.2299RANDOM64.2504
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.491.49-2.98
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded43.107
r_dihedral_angle_2_deg28.899
r_dihedral_angle_4_deg25.974
r_dihedral_angle_3_deg24.194
r_sphericity_free14.346
r_rigid_bond_restr13.924
r_dihedral_angle_1_deg3.809
r_angle_refined_deg1.426
r_chiral_restr0.11
r_bond_refined_d0.021
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded43.107
r_dihedral_angle_2_deg28.899
r_dihedral_angle_4_deg25.974
r_dihedral_angle_3_deg24.194
r_sphericity_free14.346
r_rigid_bond_restr13.924
r_dihedral_angle_1_deg3.809
r_angle_refined_deg1.426
r_chiral_restr0.11
r_bond_refined_d0.021
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2539
Nucleic Acid Atoms
Solvent Atoms10
Heterogen Atoms

Software

Software
Software NamePurpose
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling