4FON

High Energy Remote SAD structure solution of Proteinase K from the 37.8 keV Tellurium K edge


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72951 uL 60 mg/mL protein + 1 uL reservoir (1 mL saturated potassium tellurate), cryo-solution: 70% crystallization solution, 30% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.0640.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.18α = 90
b = 68.18β = 90
c = 102.688γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2011-11-21LLAUE
21x-ray100CCDADSC QUANTUM 270Rh coated toroidal focusing mirror2011-11-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID15C0.328ESRFID15C
2SYNCHROTRONNSLS BEAMLINE X6A1.377NSLSX6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.051298.40.09913.47.7111263111263224.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.051.0799.60.662.17.65538

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.0511.89105533556898.330.112860.111910.13073RANDOM6.44
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.030.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.197
r_sphericity_free20.902
r_dihedral_angle_4_deg14.59
r_dihedral_angle_3_deg10.941
r_dihedral_angle_1_deg6.205
r_sphericity_bonded4.555
r_angle_refined_deg1.342
r_rigid_bond_restr1.074
r_angle_other_deg0.923
r_chiral_restr0.085
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.197
r_sphericity_free20.902
r_dihedral_angle_4_deg14.59
r_dihedral_angle_3_deg10.941
r_dihedral_angle_1_deg6.205
r_sphericity_bonded4.555
r_angle_refined_deg1.342
r_rigid_bond_restr1.074
r_angle_other_deg0.923
r_chiral_restr0.085
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2032
Nucleic Acid Atoms
Solvent Atoms412
Heterogen Atoms25

Software

Software
Software NamePurpose
SPECdata collection
SHELXSphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling