4E1K

GlmU in complex with a Quinazoline Compound


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.12961.6-1.8 M ammonium sulfate and 0.1 M MES pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
3.7567.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.028α = 90
b = 109.028β = 90
c = 323.602γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120CCDRIGAKU SATURN 944+2008-10-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ DW1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1261.492.4466004648021.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.07620.321.81.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT254.554412644126235492.050.251120.246620.244730.28363RANDOM50.673
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.630.320.63-0.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.108
r_dihedral_angle_4_deg20.316
r_dihedral_angle_3_deg11.751
r_dihedral_angle_1_deg5.711
r_scangle_it2.293
r_scbond_it1.322
r_angle_refined_deg1.101
r_mcangle_it0.882
r_angle_other_deg0.791
r_mcbond_it0.464
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.108
r_dihedral_angle_4_deg20.316
r_dihedral_angle_3_deg11.751
r_dihedral_angle_1_deg5.711
r_scangle_it2.293
r_scbond_it1.322
r_angle_refined_deg1.101
r_mcangle_it0.882
r_angle_other_deg0.791
r_mcbond_it0.464
r_mcbond_other0.082
r_chiral_restr0.062
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3414
Nucleic Acid Atoms
Solvent Atoms408
Heterogen Atoms57

Software

Software
Software NamePurpose
CrystalCleardata collection
AMoREphasing
REFMACrefinement
CrystalCleardata reduction
CrystalCleardata scaling