3ULP

Plasmodium falciparum SSB complex with ssDNA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52770.1 M Bis-Tris Propane, pH 8.5, 20 % PEG 3350, 0.2 M sodium bromide, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.6453.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 118.017α = 90
b = 82.794β = 99.57
c = 87.556γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++2011-03-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODECu FINE FOCUS1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15099.40.068348456-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1497.30.5292.832375

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1EQQ2.13045791243899.20.220840.217950.27557RANDOM40.239
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.10.030.73-1.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.691
r_dihedral_angle_3_deg20.654
r_dihedral_angle_4_deg18.668
r_dihedral_angle_1_deg9.257
r_scangle_it6.554
r_scbond_it4.727
r_mcangle_it3.731
r_mcbond_it2.233
r_angle_refined_deg1.468
r_chiral_restr0.111
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.691
r_dihedral_angle_3_deg20.654
r_dihedral_angle_4_deg18.668
r_dihedral_angle_1_deg9.257
r_scangle_it6.554
r_scbond_it4.727
r_mcangle_it3.731
r_mcbond_it2.233
r_angle_refined_deg1.468
r_chiral_restr0.111
r_gen_planes_refined0.019
r_bond_refined_d0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3638
Nucleic Acid Atoms1000
Solvent Atoms228
Heterogen Atoms

Software

Software
Software NamePurpose
CrystalCleardata collection
PHASESphasing
ARP/wARPmodel building
Cootmodel building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling