3TWZ

Phosphorylated Bacillus cereus phosphopentomutase in space group P212121


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.2298125 mM manganese chloride, 1.8 M ammonium citrate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.8757.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.675α = 90
b = 76.581β = 90
c = 97.374γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-G0.979APS21-ID-G

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.755091.647942-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8163.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.75204794245485242899.990.171410.171410.170270.19222RANDOM14.525
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.5-2.17-1.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.851
r_dihedral_angle_4_deg18.489
r_dihedral_angle_3_deg12.823
r_dihedral_angle_1_deg5.344
r_scangle_it2.018
r_scbond_it1.176
r_angle_refined_deg1.04
r_mcangle_it0.625
r_mcbond_it0.322
r_chiral_restr0.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.851
r_dihedral_angle_4_deg18.489
r_dihedral_angle_3_deg12.823
r_dihedral_angle_1_deg5.344
r_scangle_it2.018
r_scbond_it1.176
r_angle_refined_deg1.04
r_mcangle_it0.625
r_mcbond_it0.322
r_chiral_restr0.07
r_bond_refined_d0.007
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3069
Nucleic Acid Atoms
Solvent Atoms443
Heterogen Atoms2

Software

Software
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
CNSrefinement
HKL-2000data reduction
SCALEPACKdata scaling