X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.230125% PEG 1000, 200 mM LiCl 50 mM phosphate/citrate buffer, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 301K
Crystal Properties
Matthews coefficientSolvent content
2.8657.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 227.18α = 90
b = 165.51β = 91.17
c = 115.94γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90PIXELPSI PILATUS 6MLN2 cooled fixed-exit Si(111) monochromator, Dynamically bendable mirror2008-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.98089SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.42098.2154688154688
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.599.20.4273.2319000

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.420154688154688913698.160.226480.226480.223860.27091THIN RESOLUTION SHELLS DUE TO CRYSTALLOGRAPHIC SYMMETRY31.246
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.09-0.171.04-1.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.478
r_dihedral_angle_3_deg12.652
r_dihedral_angle_4_deg11.027
r_dihedral_angle_1_deg4.977
r_scangle_it0.973
r_angle_refined_deg0.841
r_angle_other_deg0.767
r_scbond_it0.581
r_mcangle_it0.448
r_mcbond_it0.232
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.478
r_dihedral_angle_3_deg12.652
r_dihedral_angle_4_deg11.027
r_dihedral_angle_1_deg4.977
r_scangle_it0.973
r_angle_refined_deg0.841
r_angle_other_deg0.767
r_scbond_it0.581
r_mcangle_it0.448
r_mcbond_it0.232
r_chiral_restr0.05
r_mcbond_other0.025
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms26297
Nucleic Acid Atoms
Solvent Atoms840
Heterogen Atoms84

Software

Software
Software NamePurpose
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling