3T7D

Vall from streptomyces hygroscopicus in complex with trehalose


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529430% PEG4000, 200mM MgCl2, 100mM Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
1.8131.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.661α = 90
b = 45.82β = 107.36
c = 115.03γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.9792SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.739.7882832

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.739.7882832437399.010.165040.162490.21369RANDOM31.348
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.01-0.020.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.745
r_dihedral_angle_4_deg15.167
r_dihedral_angle_3_deg14.33
r_sphericity_bonded14.124
r_rigid_bond_restr12.621
r_sphericity_free10.781
r_dihedral_angle_1_deg6.05
r_angle_refined_deg1.432
r_angle_other_deg0.838
r_chiral_restr0.091
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.745
r_dihedral_angle_4_deg15.167
r_dihedral_angle_3_deg14.33
r_sphericity_bonded14.124
r_rigid_bond_restr12.621
r_sphericity_free10.781
r_dihedral_angle_1_deg6.05
r_angle_refined_deg1.432
r_angle_other_deg0.838
r_chiral_restr0.091
r_bond_other_d0.054
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7175
Nucleic Acid Atoms
Solvent Atoms627
Heterogen Atoms74

Software

Software
Software NamePurpose
HKL-2000data collection
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
SCALAdata scaling