3RHB

Crystal structure of the apo form of glutaredoxin C5 from Arabidopsis thaliana

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH		277	1.6 M ammonium sulfate, 500 mM lithium chloride, Microbatch, temperature 277K

Crystal Properties
Matthews coefficient	Solvent content
1.86	34.03

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.527	α = 90
b = 39.02	β = 90
c = 37.603	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r	mirrors	2010-05-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE BM30A	0.97926	ESRF	BM30A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.2	33.25	94	0.052	21.9	7.5		26715

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 3FZ9	1.2	33.25	26715	26715	1423	93.93	0.15029	0.15029	0.15029	0.17585	RANDOM	18.551

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.03			0.08		-0.11

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.202
r_dihedral_angle_4_deg	26.133
r_dihedral_angle_3_deg	12.18
r_scangle_it	8.266
r_scbond_it	5.79
r_dihedral_angle_1_deg	5.787
r_mcangle_it	4.269
r_mcbond_it	2.932
r_rigid_bond_restr	2.775
r_angle_refined_deg	2.209
r_chiral_restr	0.134
r_bond_refined_d	0.025
r_gen_planes_refined	0.012

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	784
Nucleic Acid Atoms
Solvent Atoms	108
Heterogen Atoms	35

Software

Software
Software Name	Purpose
Xnemo	data collection
MOLREP	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling