3QY5

Microfluidic crystallization of Thaumatin using the Crystal Former


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5298Microfluidic crystallization using the Crystal Former, 0.1 M HEPES, 0.8 M potassium sodium tartrate tetrahydrate, pH 7.5, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.8356.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.914α = 90
b = 57.914β = 90
c = 150.13γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102008-08-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X6ANSLSX6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.252599.70.05329.47.771681714661.81.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.251.2795.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.2523677446774436091000.15450.15450.15370.16955RANDOM11.995
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.230.23-0.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.886
r_dihedral_angle_4_deg15.49
r_dihedral_angle_3_deg11.136
r_sphericity_free7.047
r_dihedral_angle_1_deg6.588
r_sphericity_bonded4.281
r_scangle_it3.677
r_scbond_it2.685
r_mcangle_it2.021
r_angle_refined_deg1.461
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.886
r_dihedral_angle_4_deg15.49
r_dihedral_angle_3_deg11.136
r_sphericity_free7.047
r_dihedral_angle_1_deg6.588
r_sphericity_bonded4.281
r_scangle_it3.677
r_scbond_it2.685
r_mcangle_it2.021
r_angle_refined_deg1.461
r_mcbond_it1.432
r_rigid_bond_restr1.416
r_nbtor_refined0.31
r_nbd_refined0.198
r_symmetry_vdw_refined0.184
r_xyhbond_nbd_refined0.138
r_symmetry_hbond_refined0.111
r_chiral_restr0.094
r_bond_refined_d0.012
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1545
Nucleic Acid Atoms
Solvent Atoms201
Heterogen Atoms10

Software

Software
Software NamePurpose
HKL-3000data collection
MOLREPphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling