3QB2
The Crystal Structure of Immunity Factor for SPN (IFS)
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 1.6-2.0 ammonium sulfate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.77 | 55.58 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 108.032 | α = 90 |
b = 108.032 | β = 90 |
c = 147.047 | γ = 120 |
Symmetry | |
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Space Group | P 31 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | NOIR-1 | Rosenbaum-Rock Si(111) sagitally focused monochromator | 2005-06-01 | M | MAD |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ALS BEAMLINE 4.2.2 | 0.97901, 0.97932, 0.99504 | ALS | 4.2.2 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.5 | 46.8 | 100 | 0.069 | 8.24 | 34514 | 2 | 2 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | MAD | THROUGHOUT | 2.5 | 46.78 | 66456 | 32775 | 1739 | 98.83 | 0.26042 | 0.26042 | 0.25875 | 0.28986 | RANDOM | 35.886 |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
0.03 | 0.01 | 0.03 | -0.04 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 34.238 |
r_dihedral_angle_4_deg | 26.066 |
r_dihedral_angle_3_deg | 18.2 |
r_dihedral_angle_1_deg | 5.065 |
r_scangle_it | 2.673 |
r_scbond_it | 1.69 |
r_angle_refined_deg | 1.101 |
r_mcangle_it | 1.031 |
r_angle_other_deg | 0.873 |
r_mcbond_it | 0.525 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 4900 |
Nucleic Acid Atoms | |
Solvent Atoms | 155 |
Heterogen Atoms | 30 |
Software
Software | |
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Software Name | Purpose |
Blu-Ice | data collection |
SHARP | phasing |
REFMAC | refinement |
d*TREK | data reduction |
d*TREK | data scaling |