3OV8

Crystal structure of AF1382 from Archaeoglobus fulgidus, High resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1modified macrobatch4.6291Microbatch using 1.0 microliter drops containing equal volumes of protein concentrate (2.8 mg/ml) and solution containg 0.2 M ammonium sulfate, 0.1 M sodium acetate, 30% w/v polyethylene glycol monomethyl ether, temperature 291k, pH 4.6, modified macrobatch
Crystal Properties
Matthews coefficientSolvent content
2.754.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.033α = 90
b = 53.033β = 90
c = 40.968γ = 90
Symmetry
Space GroupP 42

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDROSENBAUM2007-08-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID0.974APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.855099.90.05160.6613.398769859
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.9299.80.23312.9612.5

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISPDB ENTRY 3O3K1.850137.59876976149398.970.18040.17860.2145
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.5977-0.59771.1953
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d14.608
f_angle_d0.998
f_chiral_restr0.067
f_bond_d0.008
f_plane_restr0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms748
Nucleic Acid Atoms
Solvent Atoms76
Heterogen Atoms6

Software

Software
Software NamePurpose
PHENIXrefinement
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling
CNSphasing
SERGUIdata collection