3OEP

Crystal structure of TTHA0988 in space group P43212


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529317.9%(w/v) PEG 8000, 10.5%(v/v) glycerol, 60mM sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4449.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.289α = 90
b = 75.289β = 90
c = 183.032γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2010-03-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.95369Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75501000.11811.314.15399553995-318.343
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.751.781000.8174.114.22619

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTIDENTICAL PROTEIN IN SPACEGROUP P2121211.7547.45388253882274599.230.16410.16410.16270.1918RANDOM21.844
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.270.27-0.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.894
r_dihedral_angle_4_deg14.558
r_dihedral_angle_3_deg11.049
r_dihedral_angle_1_deg5.505
r_scangle_it4.958
r_scbond_it3.011
r_mcangle_it2.073
r_mcbond_it1.208
r_angle_refined_deg1.166
r_angle_other_deg0.787
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.894
r_dihedral_angle_4_deg14.558
r_dihedral_angle_3_deg11.049
r_dihedral_angle_1_deg5.505
r_scangle_it4.958
r_scbond_it3.011
r_mcangle_it2.073
r_mcbond_it1.208
r_angle_refined_deg1.166
r_angle_other_deg0.787
r_mcbond_other0.359
r_chiral_restr0.065
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3640
Nucleic Acid Atoms
Solvent Atoms500
Heterogen Atoms23

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection