3MBZ

OXA-24 beta-lactamase complex soaked with 10mM SA4-17 inhibitor for 15min


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52M (NH3)2SO4, 0.1M Tris pH 8.5, room temperature, VAPOR DIFFUSION, SITTING DROP
Crystal Properties
Matthews coefficientSolvent content
4.1370.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.083α = 90
b = 103.083β = 90
c = 85.802γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rvertically focusing mirror and a horizontally focusing monochromator2008-02-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.29NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.65093.40.1112.11476013786
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.62.6959.20.3012.11434

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.632.61305869293.530.175660.17380.21116RANDOM27.762
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.923
r_dihedral_angle_3_deg17.242
r_dihedral_angle_4_deg15.711
r_scangle_it7.146
r_dihedral_angle_1_deg5.045
r_scbond_it4.33
r_mcangle_it2.902
r_mcbond_it1.497
r_angle_refined_deg1.39
r_chiral_restr0.087
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.923
r_dihedral_angle_3_deg17.242
r_dihedral_angle_4_deg15.711
r_scangle_it7.146
r_dihedral_angle_1_deg5.045
r_scbond_it4.33
r_mcangle_it2.902
r_mcbond_it1.497
r_angle_refined_deg1.39
r_chiral_restr0.087
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1939
Nucleic Acid Atoms
Solvent Atoms105
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement