Experiment: 3M7M

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.6	298	ammonium sulfate, lithium sulfate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
3.03	59.43

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 65.981	α = 90
b = 65.981	β = 90
c = 145.954	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	93	IMAGE PLATE	MAC Science DIP-2030	mirrors	2002-05-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PAL/PLS BEAMLINE 6B	1.	PAL/PLS	6B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.9	50	91.5	0.066	0.066	11.8	4.7	7120	6752	1	1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (I)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1i7F	2.9	30.06	1	1	7120	6752	326	92.35	0.22673	0.2242	0.28059	RANDOM	70.315

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
5.28			5.28		-10.56

RMS Deviations
Key	Refinement Restraint Deviation
r_scangle_it	11.435
r_scbond_it	7.541
r_mcangle_it	6.254
r_dihedral_angle_1_deg	5.782
r_mcbond_it	3.658
r_angle_refined_deg	2.85
r_symmetry_hbond_refined	0.421
r_nbd_refined	0.34
r_symmetry_vdw_refined	0.269
r_xyhbond_nbd_refined	0.208

RMS Deviations
Key	Refinement Restraint Deviation
r_scangle_it	11.435
r_scbond_it	7.541
r_mcangle_it	6.254
r_dihedral_angle_1_deg	5.782
r_mcbond_it	3.658
r_angle_refined_deg	2.85
r_symmetry_hbond_refined	0.421
r_nbd_refined	0.34
r_symmetry_vdw_refined	0.269
r_xyhbond_nbd_refined	0.208
r_chiral_restr	0.125
r_gen_planes_refined	0.026
r_bond_refined_d	0.018

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1810
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.