3LFO

Crystal structure of T. celer L30e E90A/R92A variant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP628918% PEG 3350, 0.1M sodium citrate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
1.8633.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 23.913α = 90
b = 53.097β = 108.57
c = 33.466γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110IMAGE PLATERIGAKU RAXIS IVVariMax HR optics2007-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.831.7298.10.07314.83727955
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.996.30.2443.731034

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1H7M1.831.721694033598.110.167010.167010.165210.20385RANDOM12.713
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.02-1.3-0.4-0.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.822
r_dihedral_angle_4_deg18.787
r_dihedral_angle_3_deg12.525
r_dihedral_angle_1_deg6.111
r_scangle_it3.868
r_scbond_it2.879
r_angle_refined_deg1.94
r_mcangle_it1.694
r_mcbond_it1.227
r_angle_other_deg1.123
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.822
r_dihedral_angle_4_deg18.787
r_dihedral_angle_3_deg12.525
r_dihedral_angle_1_deg6.111
r_scangle_it3.868
r_scbond_it2.879
r_angle_refined_deg1.94
r_mcangle_it1.694
r_mcbond_it1.227
r_angle_other_deg1.123
r_mcbond_other0.381
r_symmetry_vdw_other0.349
r_symmetry_hbond_refined0.309
r_nbd_refined0.23
r_xyhbond_nbd_refined0.194
r_nbd_other0.191
r_nbtor_refined0.182
r_chiral_restr0.13
r_symmetry_vdw_refined0.118
r_nbtor_other0.092
r_bond_refined_d0.027
r_bond_other_d0.021
r_gen_planes_refined0.009
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms747
Nucleic Acid Atoms
Solvent Atoms76
Heterogen Atoms

Software

Software
Software NamePurpose
CrystalCleardata collection
MOLREPphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling