X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3H8Z 

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.1861.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.102α = 90
b = 73.102β = 90
c = 94.412γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray2009-11-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.726.295131

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3H8Z2.726.29489123799.880.249860.247670.29577RANDOM92.725
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.06-0.130.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.886
r_dihedral_angle_3_deg26.882
r_dihedral_angle_4_deg26.414
r_dihedral_angle_1_deg13.384
r_scangle_it7.536
r_scbond_it4.446
r_mcangle_it3.465
r_mcbond_it1.797
r_angle_refined_deg0.88
r_chiral_restr0.071
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.886
r_dihedral_angle_3_deg26.882
r_dihedral_angle_4_deg26.414
r_dihedral_angle_1_deg13.384
r_scangle_it7.536
r_scbond_it4.446
r_mcangle_it3.465
r_mcbond_it1.797
r_angle_refined_deg0.88
r_chiral_restr0.071
r_gen_planes_refined0.021
r_bond_refined_d0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms893
Nucleic Acid Atoms
Solvent Atoms26
Heterogen Atoms38

Software

Software
Software NamePurpose
REFMACrefinement