X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.52772 microliters of 100 mM inhibitor stock in DMSO was added to 100 microliters of 8.4 mg/mL protein in 20 mM Tris, 100 mM DTT, pH 8.0. Protein solution was mixed with an equal volume of well solution (1.0-1.1 M Citrate, 50 mM HEPES or PIPES pH 6.5, 25 mM DTT), VAPOR DIFFUSION, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4850.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.598α = 90
b = 62.598β = 90
c = 129.389γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.82095.72793326732
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.85

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.819.9424018271495.70.170250.170250.166740.20224RANDOM9.42
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.12-0.250.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.334
r_dihedral_angle_4_deg13.978
r_dihedral_angle_3_deg12.108
r_dihedral_angle_1_deg5.725
r_scangle_it2.064
r_scbond_it1.318
r_angle_refined_deg1.202
r_angle_other_deg0.85
r_mcangle_it0.68
r_mcbond_it0.428
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.334
r_dihedral_angle_4_deg13.978
r_dihedral_angle_3_deg12.108
r_dihedral_angle_1_deg5.725
r_scangle_it2.064
r_scbond_it1.318
r_angle_refined_deg1.202
r_angle_other_deg0.85
r_mcangle_it0.68
r_mcbond_it0.428
r_symmetry_vdw_other0.198
r_nbd_refined0.191
r_nbd_other0.181
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.123
r_symmetry_vdw_refined0.119
r_mcbond_other0.089
r_nbtor_other0.081
r_symmetry_hbond_refined0.072
r_chiral_restr0.071
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1906
Nucleic Acid Atoms
Solvent Atoms243
Heterogen Atoms51

Software

Software
Software NamePurpose
HKL-2000data collection
AMoREphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling