3KB0

Crystal structure of abscisic acid-bound PYL2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.5298Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.4864.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.269α = 90
b = 61.269β = 90
c = 255.1γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2009-08-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.0APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.953097.30.139.2217822167322

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT1.9529.7921673157399.80.2150.2130.24145.32
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.380.190.38-0.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.907
r_dihedral_angle_4_deg20.324
r_dihedral_angle_3_deg15.68
r_sphericity_free14.705
r_sphericity_bonded10.763
r_scangle_it6.197
r_dihedral_angle_1_deg6.065
r_rigid_bond_restr4.127
r_scbond_it4.084
r_mcangle_it3.322
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.907
r_dihedral_angle_4_deg20.324
r_dihedral_angle_3_deg15.68
r_sphericity_free14.705
r_sphericity_bonded10.763
r_scangle_it6.197
r_dihedral_angle_1_deg6.065
r_rigid_bond_restr4.127
r_scbond_it4.084
r_mcangle_it3.322
r_mcbond_it1.872
r_angle_refined_deg1.565
r_angle_other_deg0.927
r_mcbond_other0.61
r_chiral_restr0.102
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_gen_planes_other0.003
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1395
Nucleic Acid Atoms
Solvent Atoms88
Heterogen Atoms19

Software

Software
Software NamePurpose
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction